Welcome to INSaFLU’s documentation!

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INSaFLU-TELEVIR platform is a free bioinformatics web-based (but also locally installable) suite that deals with primary sequencing data (Illumina, Ion Torrent and Oxford Nanopore Technologies reads) towards:

  • metagenomics virus detection (from reads to virus detection)

  • routine genomic surveillance (from reads to mutations detection, consensus generation, virus classification, alignments, “genotype-phenotype” screening, phylogenetics, integrative Nextstrain phylogeographical and temporal analysis etc).

INSaFLU-TELEVIR versatility and functionality is expected to supply public health laboratories and researchers with a user-oriented “start-to-end” bioinformatics framework that can potentiate a strengthened and timely detection and monitoring of viral (emerging) threats.

Overview

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How to Cite

If you use INSaFLU in your work, please cite these publications:

Contact

If you have any questions, comments or suggestions, please contact us: <vitor.borges@insa.min-saude.pt> or <insaflu@insa.min-saude.pt>

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